Basics
======

.. toctree::
   :maxdepth: 1

   create-an-experiment
   register-stacks-with-fiji
   correct-a-fluo-background
   perform-model-free-background-correction
   align-channels
   segment-with-threshold-wizard
   apply-a-segmentation-model
   annotate-a-group
   annotate-an-event
   annotate-for-segmentation
   configure-and-run-tracking
   correct-a-track
   perform-conditional-cell-classification
   detect-spots-within-cells
   measure-locally-corrected-intensity-measurements
   measure-peripheral-intensity
   measure-texture
   measure-cell-interactions
   visualize-cell-interactions
   plot-a-time-averaged-measurement
   detect-an-event-with-conditions
   plot-survival
   plot-synchronized-time-series